Well that is not the issue.
If anything the system is simpler this way.
OK for those of you in the cheap seats

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coils have 2 wires one is positive the other one goes right to the ignitor
The ignitor has 8 wires
2 go to the coils
1 positive
1 ground
1 to the fuel pump
1 from the side stand relay
2 from the pickup coil
That is the entire ignition system. You could take it off the bike and as long as you grounded the ground and ss relay wire and provided 12v to the positive wires it would do its job.
For the last time, there is no issue there. IT ALL WORKS AND IS TESTED upto the pickup coil.
You guys keep telling me about putting it back the way it was. THE CRANK IS NEW! and I am not freaking taking that out.
So someone tell me about the crank trigger.